Basic Utility

Dna to Protein

Translation

Tool designed to translate dna into protein

Upload single sequence fasta file :

Genetic Code :

Consensus sequence

Consensus

Tool designed to generate a consensus from a fasta alignment

ORF Finder

Examine a nucleotide sequence and identify the ORFs in the sequence

Upload single sequence fasta file :

Minimum ORF length :

Sequence Summary

SEQUENCE SUMMARY

Tool designed to provide length, A:T:G:C:N count, GC content and AT content of the sequence.

Find K-mers

FIND K-mers

Tool designed to find all the k-mers from a fasta file containing multiple nucleotide sequences

CAI-Calculator

CODON ADAPTATION INDEX

CAI (Codon Adaptation Index) is an effective measure of synonymous codon usage bias. It may give an approximate indication of the likely success of the heterologous gene expression

Upload fasta file (whose CAI will be calculated) :

Reference Sequence (gene sequence as the reference set) :

*Make sure total count of nucleotides in a sequence is divisible by 3 (Codon Triplet)

Sequence Analysis

Dna to Protein

Translation

Upload single sequence fasta file :

Genetic Code :

Consensus sequence

Consensus

Upload multi sequence fasta file :

ORF Finder

ORF Finder

Upload single sequence fasta file :

Minimum ORF length :

Sequence Summary

SEQUENCE SUMMARY

Upload multi/single sequence(s) fasta file :

Find K-mers

FIND K-mers

Upload multi sequence fasta file :

Length of K-mer :

CAI-Calculator

CODON ADAPTATION INDEX

Upload fasta file (whose CAI will be calculated) :

Reference Sequence (gene sequence as the reference set) :

Sequence Analysis

Dna to Protein

Translation

Upload single sequence fasta file :

Genetic Code :

Consensus sequence

Consensus

Upload multi sequence fasta file :

ORF Finder

ORF Finder

Upload single sequence fasta file :

Minimum ORF length :

Sequence Summary

SEQUENCE SUMMARY

Upload multi/single sequence(s) fasta file :

Find K-mers

FIND K-mers

Upload multi sequence fasta file :

Length of K-mer :

CAI-Calculator

CODON ADAPTATION INDEX

Upload fasta file (whose CAI will be calculated) :

Reference Sequence (gene sequence as the reference set) :

Translation Result:

Consensus Result:

ORF Result:

Sequence summary :

Find K-mers Result :

Codon Adaptive Index Result :