Jaypee University Of IT

Lab.BioinfoIndia.Org


Dr. Tiratha Raj Singh | Department of Bioinformatics

Publications

[Refreed Journals] [Refreed Proceedings] [Book Chapters]
[Abstracts and Posters]

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Refreed Journals:

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[72] Rohit Shukla, Tiratha Raj Singh (2021) High-throughput screening of natural compounds and inhibition of a major therapeutic target HsGSK-3ß for Alzheimer’s disease using computational approaches, Journal of Genetic Engineering and Biotechnology, 19 (1) 1-17. [PubMed].

[71] Ankita Shukla, Tiratha Raj Singh (2021) Structure based inference of functional single nucleotide polymorphism and its role in TGFß1 allied colorectal cancer (CRC), IJBRA, 17 (1) 80-99. [PubMed].

[70] Arvind Kumar Yadav, Tiratha Raj Singh (2021) Novel structural and functional impact of damaging single nucleotide polymorphisms (SNPs) on human SMYD2 protein using computational approaches, Meta Gene, 28 100871-. [PubMed].

[69] NS Munjal, R Shukla, Tiratha Raj Singh (2021) Physicochemical characterization of paclitaxel prodrugs with cytochrome 3A4 to correlate solubility and bioavailability implementing molecular docking and simulation studies, Journal of Biomolecular Structure and Dynamics, 39 1-13. [PubMed].

[68] Sadhika Behl, Arushi Sharma, Prashanth Suravajhala, Tiratha Raj Singh (2021) Computational studies to explore the role of MSI associated DNA mismatch repair mechanisms in HNPCC through expression and interaction data, IJBRA, 16 (4) 408-416. [PubMed].

[67] Arvind Kumar Yadav, Rohit Shukla, Harish Changotra, Tiratha Raj Singh (2020) Recent challenges and progress of potential vaccines for Coronavirus disease 2019 (COVID-19), International Journal for Computational Biology, 7 (1) 7-23. [PubMed].

[66] Rohit Shukla Tiratha Raj Singh(2020)Neuroinflammation in Alzheimers Disease: Current Therapeutic Approaches and Recent Progress. Journal of Neurology and Brain Disorders, 4(5), 403-407. [PubMed].

[65] Rohit Shukla Tiratha Raj Singh(2020)Identification of small molecules against cyclin dependent kinase-5 using chemoinformatics approach for Alzheimers disease and other tauopathies. Journal of Biomolecular Structure and Dynamics, 38 (). [PubMed].

[64] Varsha Mehta, Tanya Singh, Ankush Bansal, Tiratha Raj Singh (2020). SCAN DB: an integrated catalogue of computationally characterised NER specific skin cancers (Forthcoming article). International Journal of Bioinformatics Research and Applications, 16 (3), 245-256. [PubMed].

[63] Nupur S Munjal, Rohit Sharma, Tiratha Raj Singh (2019). Chemometric approach to estimate kinetic properties of paclitaxel prodrugs and their substructures for solubility prediction through molecular modelling and simulation studies. Journal of Chemometrics, e3181 (), 1-16. [PubMed].

[62] Ashwani Kumar, Ankush Bansal, Tiratha Raj Singh (2019). ABCD: Alzheimers disease Biomarkers Comprehensive Database. 3 Biotech, 9 (10), 351-357. [PubMed].

[61] Rohit Shukla, Tiratha Raj Singh (2019). Virtual screening, pharmacokinetics, molecular dynamics and binding free energy analysis for small natural molecules against cyclin-dependent kinase 5 for Alzheimer’s disease. Journal of Biomolecular Structure and Dynamics, (), 1-15.

[60] Rohit Shukla, Nupur S Munjal, Tiratha Raj Singh (2019). Identification of novel small molecules..for Alzheimer's disease using chemoinformatics approach. Journal of Molecular Graphics and Modelling, 91 (), 91-104. [PubMed].

[59] Asati N, Mishra A, Shukla A, Tiratha Raj Singh (2019). Gene Expression Studies to Identify Significant Genes in AR, MTOR, MAPK Pathways and their Overlapping Regulatory Role in Prostate Cancer. Journal of integrative bioinformatics. [PubMed]. [PubMed].

[58] Ashwani Kumar, Vineet Mehta, Utkarsh Raj, Pritish Kumar Varadwaj, Udayabanu M, Raghu M. Yennamalli , Tiratha Raj Singh (2019). Computational and In-Vitro Validation of Natural Molecules as Potential Acetylcholinesterase Inhibitors and Neuroprotective Agents. Current Alzheimer Research, 16 (2), 116-127. [PubMed]. [PubMed].

[57] Ankush Bansal, Tiratha Raj Singh, Rajinder Singh Chauhan (2018). Publisher Correction: A novel miRNA analysis framework to analyze differential biological networks. Scientific Reports, 8 (1), 1-1. [PubMed].

[56] Partha Sarathi Das, Rajdeep Poddar, Saumyadip Sarkar, MohanKumar Megha, Vijayaraghava Seshadri Sundararajan, Sivaramaiah Nallapeta, Pratap VV Reddy, Jayaraman K Valadi, Pritish Kumar Varadwaj, Tiratha Raj Singh, Prashanth Suravajhala (2018). Twelve years of BIOinformatics CLUb for Experimenting Scientists (Bioclues). PeerJ Preprints, 6 (), e26503v1. [PubMed].

[55] Rutash Kumar, Ankush Bansal, Rohit Shukla, Tiratha Raj Singh, Pramod Wasudeo Ramteke, Satendra Singh, Budhayash Gautam (2018). In silico screening of deleterious single nucleotide polymorphisms (SNPs) and molecular dynamics simulation of disease associated mutations in gene responsible for Oculocutaneous Albinism type 6 (OCA 6) disorder. Journal of Biomolecular Structure and Dynamics, 11 (), 1-30. [PubMed].

[54] Ankita Shukla, Tiratha Raj Singh (2018). Network-based Approach to Understand Dynamic Behaviour of Wnt Signaling Pathway Regulatory Elements in Colorectal Cancer. Network Modeling Analysis in Health Informatics and Bioinformatics, 7 (14). [PubMed].

[53] Ankush Bansal, Pulkit Srivastava, Tiratha Raj Singh (2018). An Integrative Approach to Develop Computational Pipeline for Drug-target Interaction Network Analysis. Scientific Reports, 8 (1), 10238. [PubMed].

[52] Nupur S Munjal, Manu Sharma, Tiratha Raj Singh (2018). Development of QSPR Strategy for the Solubility Prediction. Current Computer Aided Drug Design, 14 (4). [PubMed].

[51] PP Panigrahi, R Singla, A Bansal, MC Junior, V Jaitak, Raghu M. Yennamalli , Tiratha Raj Singh (2018). In silico Screening and Molecular Interaction Studies of Tetrahydrocannabinol and its Derivatives with Acetylcholine Binding Protein. Current Chemical Biology, 12 (2), 181-190. [PubMed].

[50] Jyoti Thakur, Tiratha Raj Singh (2018). Frame OUT and FrameOUTDB: A web based application and repository for the identification and analysis of frameshift mutations. International Journal for Computational Biology, 7 (1), 35-48. [PubMed].

[49] Ankita Shukla, Raghu M. Yennamalli , Tiratha Raj Singh (2018). Network and structure based inference of functional single nucleotide polymorphisms associated with the TGFβ1 gene and its role in colorectal cancer (CRC) . Gene Reports, 11 (June 2018), 131-142. [PubMed].

[48] Vineet Mehta, Tiratha Raj Singh, Udayabanu M (2017). Quercetin Ameliorates Chronic Unpredicted Stress-induced Behavioral Dysfunction in Male Swiss Albino Mice by Modulating Hippocampal Insulin Signaling Pathway. Physiology and Behavior, 182 (), 10-16. [PubMed].

[47] Ankush Bansal Tiratha Raj Singh R.S. Chauhan(2017) A novel miRNA analysis framework to analyze differential biological networks, Scientific Reports, 7 (1) 14604. [PubMed].

[46] Ashwani Kumar and Tiratha Raj Singh (2017) Analysis for biological network properties of Alzheimer’s disease associated gene set by enrichment and topological examinations, IJBRA. , Accepted [PubMed].

[45] Vineet Mehta, Arun Parashar, Arun Sharma, Tiratha Raj Singh, Udayabanu Malairaman (2017) Quercetin ameliorates chronic unpredicted stress mediated memory dysfunction in male Swiss albino mice by attenuating insulin resistance and elevating hippocampal GLUT4 levels independent of insulin receptor expression. Hormones and Behavior , [PubMed].

[44] Ashwani Kumar and Tiratha Raj Singh (2017) A New Decision Tree to Solve the Puzzle of Alzheimer's Disease Pathogenesis Through Standard Diagnosis Scoring System, Interdiscip Sci.: CLS , 9(1),107-115 [PubMed].

[43] Ahmed Moussa, Brigitte Vannier, Raghu M. Yennamalli, and Tiratha Raj Singh (2016) Recent Trends and Developments in Bioinformatics: Challenges and Opportunities. CSI Communications , 40 (7), 28-31 [PubMed].

[42] Ankita Shukla, Ahmed Moussa, and Tiratha Raj Singh (2016) DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies. PlosOne , 11(6):e0157031 [PubMed].

[41] Manika Sehgal, Rajinder Gupta, Ahmed Moussa, and Tiratha Raj Singh (2015) An Integrative Approach for Mapping Differentially Expressed Genes and Network Components Using Novel Parameters to Elucidate Key Regulatory Genes in Colorectal Cancer, PlosOne , 10(7):e0133901 [PubMed].

[40] Varun Kumar, Neha Sharma, Kirti Shitiz, Tiratha Raj Singh, Chanderdeep Tandon, Hemant Sood, and Rajinder Singh Chauhan (2015) An insight into conflux of metabolic traffic leading to picroside-I biosynthesis by tracking molecular time course changes in a medicinal herb, Picrorhiza kurroa. , Plant Cell, Tissue and Organ Culture: Journal of Plant Biotechnology , : [PubMed].

[39] Varun Kumar, Tiratha Raj Singh, Alkesh Hada, Monica Jolly, Andy Ganapathi, Archana Sachdev (2015) Probing Phosphorus Efficient Low Phytic Acid Content Soybean Genotypes with Phosphorus Starvation in Hydroponics Growth System., Applied Biochemistry and Biotechnology , : [PubMed].

[38] Prashanth Survajhala and Tiratha Raj Singh, (2015) Is HNF4A a candidate to study zinc finger protein slug?, IJBRA , 11(4):366-373 [PubMed].

[37] Jibesh Padhan, Varun Kumar, Hemant Sood, Tiratha Raj Singh, and Rajinder Singh Chauhan (2015) Contents of Therapeutic Metabolites in Swertia chirayita Correlate with the Expression Profiles of Multiple Genes in Corresponding Biosynthesis Pathways, Phytochemistry , : [PubMed].

[36] Ankita Shukla, Manika Sehgal, and Tiratha Raj Singh, (2015) Hydroxymethylation and its potential implication in DNA repair system: A review and future perspectives, Gene , 564:109-118 [PubMed].

[35] Ira Vashisht, Prashant Mishra, Tarun Pal, Sreekrishna Chanumolu, Tiratha Raj Singh, Rajinder Singh Chauhan (2015) 2. Mining NGS transcriptomes for miRNAs and dissecting their role in regulating growth, development, and secondary metabolites production in different organs of a medicinal herb, Picrorhiza kurroa, Planta , (DOI 10.1007/s00425-015-2255-y): [PubMed].

[34] Rohit Randhawa, Manika Sehgal, Tiratha Raj Singh, Ajay Duseja, Harish Changotra (2015) Unc-51 like kinase 1 (ULK1) in silico analysis for biomarkers identification: A vital component of autophagy, Gene , 562:40-49 [PubMed].

[33] Sarra HAMZAOUI, Smail BOUZERGANE, Tiratha Raj Singh, Hassan BADIR, and Ahmed MOUSSA(2015) Analysis of Mass Spectrometry data: Significance Analysis of Microarrays for SELDI-MS Data in Proteomics, IJCB , 4(1):05-12 [PubMed].

[32] Manika Sehgal, and Tiratha Raj Singh (2014) Systems biology approach for mutational and site-specific structural investigation of DNA repair genes for xeroderma pigmentosum, Gene , 543 (1):108-117 [PubMed].

[31] Nikhil Malhotra, Varun Kumar, Hemant Sood, Tiratha Raj Singh, and Rajinder Singh Chauhan (2014) Multiple genes of mevalonate and non-mevalonate pathways contribute to high aconites content in an endangered medicinal herb, Aconitum heterophyllum, Phytochemistry , DOI: 10.1016/j.phytochem.2014.08.025: [PubMed].

[30] Manika Sehgal, and Tiratha Raj Singh (2014) DR-GAS: A database of functional genetic variants and their phosphorylation states in human DNA repair systems, DNA Repair , 16: 97-103 [PubMed].

[29] Abhay Pratap, Setu Taliyan, and Tiratha Raj Singh (2014) NMDB: Network Motif Database Envisaged and Explicated from Human Disease Specific Pathways, Journal of Biological Systems , 22(1): 89-100 [PubMed].

[28] Arun Gupta, Sharat Chandra, and Tiratha Raj Singh (2014) HLAB27Pred: SVM Based Precise Method for Predicting HLA-B*2705 Binding Peptides in Antigenic Sequences, Netw Model Anal Health Inform Bioinforma : [PubMed].

[27] Abhik Seal, Arun Gupta, M. Mahalaxmi, Riju A. Tiratha Raj Singh, and V. Arunachalam (2014) Tools, resources and databases for SNPs and indels in sequences: A review., IJBRA 10(3): 264-96 [PubMed].

[26] Meethanshu Mittal, Rahul Singh, and Tiratha Raj Singh (2014) Prediction of ligand binding sites in RNA binding protein pockets using Support Vector Machines, Journal of Biomedical Sciences , : [PubMed].

[25] Praharshit Sharma, Bhupendra Kumar Pathak, and Tiratha Raj Singh (2014) A mathematical model of central dogma of molecular biology employing a novel irrational- integral-imaginary (i3) encoding and numerical approximation based on cellular automaton, International Journal for Computational Biology , 3(1):40-43.

[24] O. Kaissi, E.Nimpaye, Tiratha Raj Singh, B.Vannier, A.Ibrahimi, A.Ghacham, A.Moussa (2013) Gene Selection Comparative Study in Microarray Data Analysis, Bioinformation , 9(20):1019-22 [PubMed].

[23] Tiratha Raj Singh (2013) Mitochondrial genomes and frameshift mutations: hidden stop codons, their functional consequences and disease associations, International Journal of Genomic Medicine , 1: 108 [PubMed].

[22] Priya P. Panigrahi and Tiratha Raj Singh (2013) Computational studies on Alzheimer’s disease associated pathways and regulatory patterns using microarray gene expression and network data: revealed association with aging and other diseases, Journal of Theoretical Biology 334:109-121 [PubMed].

[21] Tiratha Raj Singh, Arun Gupta and Prashanth Suravajhala (2013) Challenges in the miRNA research, IJBRA , 9/6: 576-583[pdf] [PubMed]

[20] Ashwani Kumar and Tiratha Raj Singh (2013) Simulation Studies of Gene-Regulatory Pathways in Baccilus subtilis for Virulence and Competence Phenotype by Quorum Sensing, Systems and Synthetic Biology, 7:33-39.

[19] Arun Gupta and Tiratha Raj Singh (2013) SHIFT: Server for Hidden stops In frameshifted Translations, BMC Research Notes , 6:68. [PubMed] .

[18] Pooja Kaushik, C.K. Jain, R. Gabrani, and Tiratha Raj Singh (2013) Study on variability assessment and evolutionary relationships of glutamate racemase in Pseudomonas species, Interdisplinary Sciences: Computational Life Sciences . 5(4):247-57 [PubMed].

[17] Sharat Chandra, and Tiratha Raj Singh (2012) Linear B-cell epitopes prediction for epitope vaccine design against meningococcal disease and their computational validations through physicochemical properties, Netw Model Anal Health Inform Bioinforma 1(4):153-59.

[16] Digvijay Singh Chauhan, Sharat Chandra, Arun Gupta, and Tiratha Raj Singh (2012) Molecular modelling, docking and interaction studies of Human-plasmogen and Salmonella-enolase with enolase inhibitors, Bioinformation, 8/4: 185-87 [PubMed]

[15] Manika Sehgal, and Tiratha Raj Singh (2012) Identification and analysis of biomarkers for repair proteins: a bioinformatic approach, JNSBM, 2/3: 139-46 [PubMed].

[14] Priya P. Panigrahi, and Tiratha Raj Singh (2012) Computational analysis for functional and evolutionary aspects of BACE-1 and associated Alzheimer’s related proteins, IJCIStudies, 1/4: 322-32.

[13] Tiratha Raj Singh (2011) Phylogenetic Networks: Concepts, Algorithms and Applications, Book Review, Current Science 100/10:1570-71 [pdf] [PubMed]

[12] Tiratha Raj Singh, Arun Gupta, Abhik Seal, M. Mahalaxmi, Riju A. and V. Arunachalam (2011) Computational identification and analysis of single-nucleotide polymorphisms and insertions/deletions in expressed sequence tag data of Eucalyptus., Journal of Genetics 90:e34-38[pdf] [PubMed]

[11] Arun Gupta, Dinesh Chaukiker, and Tiratha Raj Singh (2011) Comparative analysis of epitope predictions: Proposed library of putative vaccine candidates for HIV, Bioinformation 5/9:386-389[pdf] [PubMed]

[10] Sharat Chandra, Digvijay Singh Chauhan, and Tiratha Raj Singh (2010) Prediction of T-cell epitopes from outer membrane protein of outer membrane vesicles of Neisseria meningitidis serogroup B, Bioinformation 5/4:155-161 [pdf] [PubMed]

[9] Prashanth Suravajhala, Jeffrey W. Bizzaro, Pritish Varadwaj, Tiratha Raj Singh and Arun Gupta (2010) Influence of virtual conferences on bioinformatics in India and developing nations. Current Science , 98(11). [pdf]

[8] Tiratha Raj Singh (2010) WEBFARM: Web Server for Finite Automated Restriction Mapping, Bioinformation 4/8:341-343 [pdf] [PubMed]

[7] Tiratha Raj Singh, Georgia Tsagkogeorga, Frederic Delsuc, Samuel Blanquart, Noa Shenkar, Yossi Loya, Emmanuel JP Douzery, and Dorothee Huchon (2009) Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny, BMC Genomics 10:534.[pdf] [PubMed]

[6] Tiratha Raj Singh and K.R. Pardasani (2009) Ambush hypothesis revisited: evidences for phylogenetic trends, Computational Biology and Chemistry 33/3:239-244.[pdf] [PubMed]

[5] Tiratha Raj Singh and K.R. Pardasani (2008) In Silico Analysis of Evolutionary Patterns in Restriction Endonucleases, In Silico Biology 9:0005. [Link to the article] [PubMed]

[4] Tiratha Raj Singh (2008) Mitochondrial Gene Rearrangements: New Paradigm in Evolutionary Biology and Systematics, Bioinformation 3/2:95-97. [pdf] [PubMed]

[3] Tiratha Raj Singh, Ophir Shneor, and Dorothee Huchon (2008) Bird Mitochondrial Gene Order: Insight from 3 Warbler Mitochondrial Genomes, Mol.Biol.Evol. 25/3:475-477.[pdf] [PubMed]

[2] Tiratha Raj Singh and K.R. Pardasani (2007) Computational Model for DNA Fragment Extraction, GAMS J of Math. Biosciences 3/1:70-78.

[1] Tiratha Raj Singh and K.R. Pardasani (2007) Computational protocol for the identification and in silico analysis of Protein Tyrosine Phosphatases (PTPs), Bioinformatics Trends, 2/1:9-16. [Abstract]

Refereed Proceedings:


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[29] Siddhant Kalra, Tiratha Raj Singh (2019). MAD: a system level computational enrichment analysis of mitochondria associated genes in Alzheimers disease. Proceedings of the International Conference on Recent Trend in Biotechnology and Bioinformatics (ICBAB- 2019), [JUIT Waknaghat, Solan, India : 01-03, August 2019].

[28] Chadia Ed-driouch, Tiratha Raj Singh, Ahmed Moussa (2019). Transcriptomics Data: Study on Gene Selection Methods. Proceedings of the International Conference on Recent Trend in Biotechnology and Bioinformatics (ICBAB- 2019) [JUIT Waknaghat : 01-03 August 2019].

[27] Rohit Shukla, Narendra Kumar, Tiratha Raj Singh (2019). Disruption of plaques and tangles formation by targeting multiple enzymes using polypharmacology approach. Proceedings of the National Biomedical Research Competition (NBRCom-2019) [2nd : PGIMER, Chandigarh : 17th Nov., 2019], pp 32-33.

[26] Tiratha Raj Singh (2019). Docking studies of Paclitaxel and Paclitaxel prodrgs with CYP enzymes to correlate solubility and bioavailability. Proceedings of the Indian Conference on Bioinformatics (Inbix), 2019 [HMV, Jalandhar, India : Feb., 22-23, 2019].

[25] Ankush Bansal, Shweta Parmar, Shorya Singh, Rohit Shukla, Tiratha Raj Singh (2018). Big data analytics inference for precision medicine to decipher regulatory interactions in lung cancer. Proceedings of the Himachal Pradesh Science Congress (HPSC) 2018 [3rd : Indian Institute of Technology (IIT) Mandi, Himachal Pradesh, India : Oct., 22-23, 2018].

[24] Sadhika Behl, Arushi Sharma, Tiratha Raj Singh (2017). Computational analysis of expression and interaction data to reveal role of DNA Mismatch Repair in MSI and HNPCC. Proceedings of the Inbix 17: Indian Conference on Bioinformatics 2017 [Birla Institute of Scientific Research, Jaipur, India : Nov. 7-9, 2017].

[23] Siddhant Kalra, Ankush Bansal, Tiratha Raj Singh (2017). Computational enrichment of Alzheimer associated human mitochondrial genes using comparative expression analysis approach. Proceedings of the Inbix 17: Indian Conference on Bioinformatics 2017 [Birla Institute of Scientific Research, Jaipur : Nov. 7-9, 2017].

[22] Ankita Shukla, Ragothaman M. Yennamalli, Tiratha Raj Singh (2017). Structure Based Inference of Functional Single Nucleotide Polymorphism L28F and to Determine its Role in TGFbeta1 Allied Colorectal Cancer (CRC). Proceedings of the Inbix 17: Indian Conference on Bioinformatics 2017 [Birla Institute of Scientific Research, Jaipur : Nov. 7-9, 2017].

[21] Ankush Bansal, Anil Kant Thakur, Tiratha Raj Singh (2017). A network analysis framework to decipher uni-directional information flow from differential transcriptome datasets for pathway of interest. Proceedings of the Indian Conference on Bioinformatics (Inbix’17) [Birla Institute of Scientific Research, Jaipur : Nov. 7-9, 2017].

[20] Ashwani kumar, Tiratha Raj Singh (2016). System Biology Approach for Gene Set Enrichment and Topological Analysis of AD. Proceedings of the International Conference on Bioinformatics and Systems biology(BSB)-2016 [IIIT-A, Allahabad, India : 4 - 6 March, 2016].

[19] Vineet Mehta, Ashwani Kumar, Tiratha Raj Singh, Udayabanu M (2015). Screening of herbal molecules against type 2 diabetes mediated memory dysfunction. Proceedings of the Annual Conference of Indian Academy of neurosciences (IAN)-2015 [Panjab University, Chandigarh, India : Oct., 31-Nov., 02, 2015], pp.36-37.

[18] Ashwani Kumar, Utkarsh Raj, Pritish Kumar Varadwaj, Tiratha Raj Singh (2015). Flexible docking and simulation studies of herbal compounds as Acetylcholinesterase inhibitor(AChEI) for Alzheimers disease. Proceedings of the National Conference on Bioinformatics Panorama in Agriculture and Health [SHIATS, Allahabad, India : 5-6 October 2015].

[17] Ashwani kumar, Vineet mehta, Utkarsh Raj, Pritish Kr. Varadwaj, Udayabanu M, Tiratha Raj Singh (2015). Insights From Docking And Molecular Dynamic Simulation of Acetyl cholinesterase Inhibitors (AChEI) Structural Model For Possible Therapeutic Of Alzheimers Disease(AD) . Proceedings of the Annual Conference of Indian Academy of neurosciences (IAN)-2015, [Panjab University, Chandigarh, India : October 31 - November 2, 2015 ].

[16] Ankita Shukla, Ashwani Kumar, Manika Sehgal, Tiratha Raj Singh (2015). Modeling and Simulation of Colorectal Cancer Pathways : An Insight into Regulatory Elements and Biological Processes. Proceedings of the Annual International Conference on Advances in Biotechnology [5th : Kanpur, India : 13-15 March 2015], pp.85-89.

[15] Manika Sehgal, Tiratha Raj Singh (2014). Bioinformatics applications to resolve the mystery of diseases associated with Human DNA repair system. Proceedings of the Annual Conference of Indian Association of Biomedical Scientists [35 : Palampur, India : 14-16 July 2014], pp.39-41.

[14] Ankita Shukla, Manika Sehgal, Tiratha Raj Singh (2014). Hydroxymethylation and its Role in DNA Repair Associated Disease. Proceedings of the International Conference on Life Sciences, Informatics, Food and Environment [Noida, India : 29-30, August 2014].

[13] Manika Sehgal, Ankita Shukla, Tiratha Raj Singh (2014). Functional Enrichment of Pathways Implicated in DNA Repair using Top Down Approach. Proceedings of the International Conference on Life Sciences, Informatics, Food and Environment [Noida, India : 29-30, August 2014], pp.180.

[12] Manika Sehgal, and Tiratha Raj Singh (2014) Bioinformatics applications to resolve the mystery of diseases associated with Human DNA repair system. , Proceedings of the Annual Conference of Indian Association of Biomedical Scientists,HPCSK Univ., Palampur, India : 14-16 July 2014, pp.39-41., [Abstract]

[11] Ankita Shukla, Manika Sehgal, and Tiratha Raj Singh (2014) Hydroxymethylation and its Role in DNA Repair Associated Disease, Proceedings of the International Conference on Life Sciences, Informatics, Food and Environment ,Noida, India : 29-30, August 2014, [Abstract]

[10] Manika Sehgal, Ankita Shukla, and Tiratha Raj Singh (2014) Functional Enrichment of Pathways Implicated in DNA Repair using Top Down Approach, Proceedings of the International Conference on Life Sciences, Informatics, Food and Environment ,Noida, India : 29-30, August 2014, [Abstract]

[9] Manika Sehgal, and Tiratha Raj Singh (2014) Computational Approach for the Identification of Plausible Biomarkers from Composite Networks and Gene Expression data Associated with Colorectal Cancer, Proceedings of the World Congress on Stem Cell Research, Cancer Biology and Applied Biotechnology,New Delhi, India : 3-4, May 2014, [Abstract]

[8] Ashwani kumar, Abhay Pratap, Urvashi, Rajinder S. Chauhan, and Tiratha Raj Singh (2013) SMDB: Soybean Marker Database, Proceedings of the IFIP International Conference of Bioinformatics,Bhopal, India : 23-26 September, 2013,, [Abstract]

[7] Manika Sehgal, and Tiratha Raj Singh (2011) Identification and analysis of biomarkers for repair proteins: a bioinformatic approach, Proceedings of I-ISC International Conference on Bioinformatics,Nov. 15-17, New Delhi, JNSBM (Special Issue: Vol.2, Issue 3), [Abstract]

[6] Mokshada Kaushik, Madhurika Sharma, and Tiratha Raj Singh (2011) WISA : Web server for interactive sequence alignment, JNSBM, (Special Issue: Vol.2, Issue 3), [Abstract] [pdf] [PubMed]

[5] Payal Bhargava, Megha Gupta, Arun Gupta and Tiratha Raj Singh (2011) WebGenPro: a Web Server for Genomic and Proteomic Analysis, IInd IFIP International Conference, Sept., 22-25, Goa, India. [Abstract]

[4] Tanya Singhania, Gurnoor Singh, Arun Gupta and Tiratha Raj Singh (2011) DOMOS: Domain and Motif Server for Functional Information, IInd IFIP International Conference, Sept., 22-25, Goa, India. [Abstract]

[3] Tiratha Raj Singh and K.R. Pardasani (2008) Bioinformatics Studies on Evolutionary Patterns in Restriction Endonucleases, Proceedings of GAMS International Conference, Jan., 10-13, Agra-Jaipur, India. [Abstract]

[2] Niket Bhargava, Amit Sugandhi, Tiratha Raj Singh and Manish Manoria (2004) In silico analysis for the construction of multiple sequence alignment and phylogenetic evaluation for the CEAL1, BRCA3 and BRCA3 related mRNA and proteins, E-Proceedings, National Conference, YCCE, Nagpur, 2004, Electronic Publication. [Abstract]

[1] Amit Sugandhi, Niket Bhargava, Tiratha Raj Singh and Manish Manoria (2004) The Biology Behind: Understanding Protein Engineering, Immunotoxins, and Drug Designing Issues and Their Application for Finding Breast Cancer Antigen Marker , E-Proceedings, National Conference, YCCE, Nagpur, 2004, Electronic Publication. [Abstract]

Book Chapters:


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[14] Rohit Shikla, Arvind Kumar Yadav, Tiratha Raj Singh (2020). Application of Deep Learning in Biological Big Data Analysis. In Hemraj Saini, Geetanjali Rathee, Dinesh Kumar Saini, Large-Scale Data Streaming, Processing, and Blockchain Security (International, pp. 117 - 148). UK: IGI Global, UK. [ISBN : 9781799834441|].

[13] Priya P. Panigrahi, Tiratha Raj Singh (2020). Data Mining, Big Data, Data Analytics: Big Data Analytics in Bioinformatics. In , Web Services: Concepts, Methodologies, Tools, and Applications (pp. ). USA: IGI Global, USA. [ISBN : 9781522575016].

[12] Manika Sehgal, Tiratha Raj Singh (2020). Principles and Analysis of Biological Networks: Biological Pathways and Network Motifs. . In , Data Analytics in Medicine: Concepts, Methodologies, Tools, and Applications (pp. 551-564). USA: IGI Blobal. [ISBN : ISBN13: 9781799812043].

[11] Ankush Bansal, Tiratha Raj Singh (2019). Epigenome Wide DNA Methylation and Histone Modification of Alzheimers Disease. In , Computational Epigenetics and Diseases (pp. 131-148). : Academic Press.

[10] Ankush Bansal, Siddhant Kalra, Babajan Banaganapalli, Tiratha Raj Singh (2019). Modeling and Optimization of Molecular Biosystems to Generate Predictive Models. In Noor Ahmad Shaik, Khalid Rehman Hakeem, Babajan Banaganapalli, Ramu Elango, Essentials of Bioinformatics, Volume I: understanding bioinformatics: genes to proteins (pp. 373-387). Switzerland : Springer, Cham. [ISBN : 978-3-030-02634-9].

[9] Tiratha Raj Singh, Ankush Bansal (2018). Phylogenetic Analysis: Gene Duplication and Speciation. In Shoba Ranganathan, Kenta Nakai, Christian Schonbach, Reference Module in Life Sciences (Encyclopedia of Bioinformatics and Computational Biology, pp. ). : Elsevier. [ISBN : 9780128114148].

[8] Tiratha Raj Singh, Ankita Shukla, Bensellak Taoufik, Ahmed Moussa, Brigitte Vannier (2018). Metabolome Analysis: Disease Biomarker Discovery. In Shoba Ranganathan, Kenta Nakai, Christian Schonbach, Reference Module in Life Sciences (Encyclopedia of Bioinformatics and Computational Biology, pp. ). : Elsevier. [ISBN : 9780128114148].

[7] Ankush Bansal, Mehul Salaria, Tiratha Raj Singh (2018). Tau Pathology: A Step Towards Understanding Neurodegenerative Disorders Network Complexity . In , Handbook of Research on Critical Examinations of Neurodegenerative Disorders (pp. 217-234). : IGI Global. [ISBN : ].

[6] Ankita Shukla, Tiratha Raj Singh (2017). Computational Network Approaches and their Applications for Complex Diseases. In Dong-Qing Wei, Yilong Ma, William C.S. Cho, Qin Xu, Fengfeng Zhou, Translational Bioinformatics and Its Application (International, pp. 337-352). Netherlands: Springer Netherlands. [ISBN : 9789402410433].

[5] Manika Sehgal, Tiratha Raj Singh, (2017). Principles and Analysis of Biological Networks: Biological Pathways and Network Motifs. In , Library and Information Services for Bioinformatics Education and Research (pp. 112-129). : IGI Global. [ISBN : 9781522518716].

[4] Priya P Panigrahi, Tiratha Raj Singh, (2017). Data Mining, Big Data, Data Analytics: Big Data Analytics in Bioinformatics. In , Library and Information Services for Bioinformatics Education and Research (pp. 112-129). : IGI Global. [ISBN : 9781522518716].

[3] Tiratha Raj Singh, Brigitte Vannier, Ahmed Moussa (2016). Extraction of Differentially Expressed Genes in Microarray Data. In Mourad Elloumi, Costas S. Iliopoulos, Jason T. L. Wang and Albert Y. Zomaya, Pattern Recognitin in Computational Molecular Biology: TECHNIQUES AND APPROACHES (International, pp. 335-345). : Wiley. [ISBN : 978-1-118-89368-5].

[2] Tiratha Raj Singh (2015). Mitogenomics: Mitochondrial Gene Rearrangements, its Implications and Applications. In R. Keshavchandran, S. Raji Radhakrishnan, Agriculture Bioinformatics (pp. 259-69). New Delhi: New India Publishing Agency. [ISBN : 978-93-83305-42-1].

[1] Tiratha Raj Singh (2014). Machine Learning with Special Emphasis on Support Vector Machines (SVMs) in Systems Biology: A Plant Perspective. In Kavi Kishor, Rajib Bandopadhyay, Prashanth Suravajhala, Agricultural Bioinformatics (pp. 273-281). New Delhi: Springer India. [ISBN : 978-81-322-1879-1].

Abstracts & Posters:


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[10] Ankita Shukla, Raghu M. Yennamalli , Tiratha Raj Singh (2017). Structure Based Inference of Functional Single Nucleotide Polymorphism L28F and to Determine its Role in TGFbeta1 Allied Colorectal Cancer (CRC). Proceedings of the Indian Conference on Bioinformatics 2017 [Jaipur : 7-9 November]. [Abstract]

[9] Jain S, Tiratha Raj Singh, Jitendraa Vashistt, Harish Changotra (2015). Molecular analysis of G1 rotavirus strains isolated from Himachal Pradesh. Proceedings of the National Conference on Emerging Trends in Host-Microb Interactions [Jalandhar, Punjab : 17-18 April 2015]. [Abstract]

[8] Manika Sehgal, and Tiratha Raj Singh (2014) Decoding the intricate biological pathways for biomarkers implicated in Human DNA repair system , SYSCON-2014: Recent Advances in Biological Sciences, Dec., 10, 2014, AIIMS, New Delhi. [Abstract]

[7] Gurnoor Singh, Tanya Singhania, Arun Gupta and Tiratha Raj Singh (2013) SHIFTDB: Database of hidden stop codons in frame-shifted translation in mitochondrial genomic sequences , ISMB-ECCB, July, 21-23, Berlin, Germany. [Abstract]

[6] Ankit Gupta, Gautam Mehta, Priya P. Panigrahi, Ahmed Moussa, and Tiratha Raj Singh (2013) MiND: web repository for Mitochondrial and Neurological associated human Disease , SCB Africa ASCBC Conference, 13-15 March 2013, Morocco. [Abstract]

[5] Digvijay Singh Chauhan Abhishek Das, Priya P. Panigrahi, and Tiratha Raj Singh (2012) Development of early phase diagnostics for Alzheimer’s disease: use of diabetes mellitus as surrogate biomarker, InCoB, 2012, Thailand Bangkok, [Abstract: Poster]

[4] Digvijay Singh Chauhan and Tiratha Raj Singh (2012) Chaos as Positive and Negative adaptation, InCoB, 2012, Thailand Bangkok, [Abstract: Poster]

[3] Priya P. Panigrahi, Ashish Shankar and Tiratha Raj Singh (2010) DBSSR: Database of Simple Sequence Repeats, 98th Indian Science Congress, [Abstract: Poster]

[2] Kavita Yadav, Sachin Pundhir, Tiratha Raj Singh, and Anil Kumar (2009) GGRP: GenBank Genome Record parser, 5th World Congress of Cellular and Molecular Biology , Nov. 2-6, 2009, at DAVV, Indore, India.[Link to the poster]

[1] Tiratha Raj Singh, C.K. Verma, Ganesh N., Namita Srivastava and K.R. Pardasani (2005) In silico analysis of biological sequences by using bioinformatics tools, National Conference on Bioinformatics and Contemporary Drifts in Life Science , Dec. 12th to 15th, 2005 at NITTR , Bhopal, India. [Awarded best in Bioinformatics Section]



Mailing Address

Dr. Tiratha Raj Singh
Associate Professor & Faculy In-charge, Media Relations
Department of Biotechnology and Bioinformatics
Jaypee University Of Information and Technology
P.O. Waknaghat, Teh. Kandaghat,
Distt. Solan, H.P., India

Phone: 01792-239385
Email: tiratharaj.singh@juit.ac.in
Email: tiratharaj@gmail.com

Past and Present Mentors & Collaborators

Dr. K.R. Pardasani, Mentor, 2005 onwards
Dr. Tal Pupko, Past Mentor, 2006-08
Dr. Dorothee Huchon, Past Mentor, 2006-2008;
Past Post-doctoral Advisor, 2008-09
Dr. Ahmed Moussa
Dr. Brigitte Vannier
Dr. Mourad Elloumi
Dr. Prashanth Suravajhala
Dr. Harish Changotra
Dr. Ragothaman Y.M.
Dr. Udayabanu M.



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